Enhance project structure and documentation

- Updated code structure in documentation for clarity.
- Added example configuration file for AutoGen-MCP-Server.
- Created detailed logs directory documentation.
- Expanded development requirements with additional tools.
- Updated core requirements with new dependencies.
- Added module docstrings for better code understanding.
- Introduced a web UI template for configuration management.
- Implemented integration and unit test structure.

logs/README.md

@@ -0,0 +1,27 @@
+# Logs Directory
+
+This directory contains log files for the Autogen-MCP-Server.
+
+## Log Files
+
+- `autogen-mcp-server.log` - Main application log
+- `agents.log` - Agent-specific logs
+- `mcp-server.log` - MCP server communication logs
+- `web-ui.log` - Web UI access and error logs
+
+## Log Rotation
+
+Log files are automatically rotated when they reach 10MB in size.
+Up to 5 backup files are kept.
+
+## Log Levels
+
+- `DEBUG` - Detailed diagnostic information
+- `INFO` - General information about system operation
+- `WARNING` - Warning messages about potential issues
+- `ERROR` - Error messages about failures
+- `CRITICAL` - Critical error messages
+
+## Configuration
+
+Log configuration can be adjusted in `config/config.yml` under the `logging` section.