Enhance project structure and documentation

- Updated code structure in documentation for clarity.
- Added example configuration file for AutoGen-MCP-Server.
- Created detailed logs directory documentation.
- Expanded development requirements with additional tools.
- Updated core requirements with new dependencies.
- Added module docstrings for better code understanding.
- Introduced a web UI template for configuration management.
- Implemented integration and unit test structure.

.copilot-instructions.md

@@ -64,15 +64,30 @@ This project implements a hierarchical MCP (Model Context Protocol) server syste
 
 ### Code Structure
 ```
-src/
-├── mcp_server/          # Main MCP server implementation
-├── agents/              # AutoGen agent implementations
-│   ├── moderator.py     # Moderator agent
-│   ├── base_agent.py    # Base class for specialized agents
-│   └── specialized/     # Specialized agent implementations
-├── config/              # Configuration management
-├── utils/               # Utility functions
-└── main.py             # Entry point
+├── src/                     # Source code
+│   ├── mcp_server/         # Main MCP server implementation
+│   ├── agents/             # AutoGen agent implementations
+│   │   ├── moderator.py    # Moderator agent
+│   │   ├── base_agent.py   # Base class for specialized agents
+│   │   └── specialized/    # Specialized agent implementations
+│   ├── config/             # Configuration management
+│   ├── utils/              # Utility functions
+│   ├── web_ui/             # Web UI for configuration management
+│   │   ├── api/           # REST API endpoints
+│   │   ├── static/        # CSS, JS, images
+│   │   └── templates/     # HTML templates
+│   └── main.py            # Entry point
+├── config/                 # Configuration files
+│   ├── example-config.yml  # Example configuration
+│   └── config.yml         # Actual configuration (not in git)
+├── tests/                  # Test files
+│   ├── unit/              # Unit tests
+│   └── integration/       # Integration tests
+├── logs/                   # Log files (not in git)
+├── docs/                   # Documentation
+├── requirements.txt        # Python dependencies
+├── requirements-dev.txt    # Development dependencies
+└── .venv/                 # Virtual environment
 ```
 
 ### Configuration Format
@@ -96,12 +111,15 @@ routing_rules:
 ```
 
 ### Key Technologies
-- **Python 3.12+**
+- **Python 3.12+** (3.13+ preferred when available)
 - **AutoGen**: Multi-agent framework
 - **MCP SDK**: Model Context Protocol implementation
+- **FastAPI**: Modern web framework for Web UI
 - **Pydantic**: Configuration validation
 - **PyYAML**: Configuration parsing
 - **AsyncIO**: Asynchronous operations
+- **SQLAlchemy**: Database ORM (for configuration storage)
+- **Uvicorn**: ASGI server
 
 ### Development Phases
 1. **Phase 1**: Basic MCP server + single specialized agent